GISAID |
A primary open-access resource for genomic data. |
ViPR (Virus Pathogen Resource) - Sars-Cov-2 |
Data is compiled from multiple authentic sources such as GenBank,UniProt, Immune Epitope Database, Protein DataBank, as well as direct submissions, and internal curation and analysis pipelines. This is also a resources for multiple tools for bioinformatics analysis and visualization. |
Mutations |
Protein |
Genes |
To search, retrieve, and analyze the SARS-CoV-2 GenBank data. |
Links to multiple tools and databases specialized for Sars-Cov-2 sequence data analysis |
Key genes and proteins |
Sequence links from standard DBs |
Genome annotation |
Download link for the genome Reference Sequence (NC_045512) from NCBI |
Genome sequence record |
Download link for the genome Reference Sequence (NC_045512) from NCBI |
Genome - visual display |
Download link for the genome Reference Sequence (NC_045512) from NCBI |
Refseq - gene records |
Download link for the genome Reference Sequence (NC_045512) from NCBI |
NGS data at SRA |
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Sars-Cov-2 mutation broswer v1.3 |
Genomic data and mutation data compiled from global resources, along with data from Pakistan-specific isolates |
MicroGMT |
Takes either raw sequence reads or assembled genome sequences as input and compares against database sequences to identify and characterize indels and point mutations |
Indicov |
Resource for Indian SARS-CoV genomes and variants with a searchable interface for genomes, genomic variants and variant annotations. |
Covid-19 Genomepedia |
Systematically collected details of SARS-nCoV-2 genomes, from across the globe, can be searched. |