Homology Modeling

Last updated: 2021 Aug 2
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Original Article
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Reporting the predicted model of monomeric envelope protein structure of SARS-CoV and SARS-CoV-2 ~
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 		32891874
(Microbes Infect)
PMID
32891874
Date of Publishing: 2020 Nov-Dec
Title Improved binding of SARS-CoV-2 Envelope protein to tight junction-associated PALS1 could play a key role in COVID-19 pathogenesis
Author(s) nameDe Maio F, Lo Cascio E et al.
Journal Microbes Infect
Impact factor
2.373
Citation count: 28
Date of Entry 2021 Aug 2

RNA dependent RNA polymerase 3D structure was generated by homologous modeling using Modeller. The 3D structure was used for Molecular docking chemical structures from traditional Chinese medicinal compounds. Theaflavin had a lower binding energy of -8.8kcal/mol when it docked in the catalytic pocket of SARS-CoV-2 RdRp.
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 		32167173
(J Med Virol)
PMID
32167173
Date of Publishing: 2020 Jun
Title The potential chemical structure of anti-SARS-CoV-2 RNA-dependent RNA polymerase
Author(s) nameLung J, Lin YS et al.
Journal J Med Virol
Impact factor
2.07
Citation count: 99
Date of Entry 2021 Aug 11

Homology based docking of SARS-CoV-2 RBD with hACE2 The affinity is predicted to be more favorable for RBD from SARS-CoV-2 compared to SARS-CoV.
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 		32410735
(Biochem Biophys Res Commun)
PMID
32410735
Date of Publishing: 2020 Jun 30
Title Interaction of the spike protein RBD from SARS-CoV-2 with ACE2: Similarity with SARS -Cov , hot-spot analysis and effect of the receptor polymorphism
Author(s) nameOthman H, Bouslama Z et al.
Journal Biochem Biophys Res Commun
Impact factor
2.73
Citation count: 69
Date of Entry 2021 Jul 28

Molecular interactions between the docked Spike glycoprotein of SARSCoV2 with modeled transmembrane ACE2 receptor of pangolin (Manis javanica) 3D structure of interacting protein from pangolin was generated using homology modeling.
✍
 		32383269
(J Med Virol)
PMID
32383269
Date of Publishing: 2020 Oct
Title In silico studies on the comparative characterization of the interactions of SARSCoV2 spike glycoprotein with ACE2 receptor homologs and human TLRs
Author(s) name Choudhury A, Mukherjee S.
Journal J Med Virol
Impact factor
2.07
Citation count: 162

Molecular interactions between the docked Spike protein of SARSCoV2 with modeled transmembrane ACE2 receptor of bat (Rhinolophus sinicus) . 3D structure of interacting protein from bat was generated using homology modeling.
✍
 		32383269
(J Med Virol)
PMID
32383269
Date of Publishing: 2020 Oct
Title In silico studies on the comparative characterization of the interactions of SARSCoV2 spike glycoprotein with ACE2 receptor homologs and human TLRs
Author(s) name Choudhury A, Mukherjee S.
Journal J Med Virol
Impact factor
2.07
Citation count: 162

Molecular interactions between the docked Spikeglycoprotein of SARSCoV2 with modeled transmembrane ACE2 receptor of human (Homo sapiens) . 3D structure of interacting protein from human was generated using homology modeling.
✍
 		32383269
(J Med Virol)
PMID
32383269
Date of Publishing: 2020 Oct
Title In silico studies on the comparative characterization of the interactions of SARSCoV2 spike glycoprotein with ACE2 receptor homologs and human TLRs
Author(s) name Choudhury A, Mukherjee S.
Journal J Med Virol
Impact factor
2.07
Citation count: 162

Molecular interactions between the docked Spike glycoprotein of SARSCoV2 with modeled cell surface TLR1 of human . 3D structure of interacting protein-TLR1 was generated using homology modeling.
✍
 		32383269
(J Med Virol)
PMID
32383269
Date of Publishing: 2020 Oct
Title In silico studies on the comparative characterization of the interactions of SARSCoV2 spike glycoprotein with ACE2 receptor homologs and human TLRs
Author(s) name Choudhury A, Mukherjee S.
Journal J Med Virol
Impact factor
2.07
Citation count: 162

Molecular interactions between the docked Spike glycoprotein of SARSCoV2 with modeled cell surface TLR4 of human 3D structure of interacting protein-TLR4 was generated using homology modeling.
✍
 		32383269
(J Med Virol)
PMID
32383269
Date of Publishing: 2020 Oct
Title In silico studies on the comparative characterization of the interactions of SARSCoV2 spike glycoprotein with ACE2 receptor homologs and human TLRs
Author(s) name Choudhury A, Mukherjee S.
Journal J Med Virol
Impact factor
2.07
Citation count: 162

Molecular interaction between the docked Spike glycoprotein of SARSCoV2 with modeled cell surface TLR6 of human. 3D structure of interacting protein-TLR6 was generated using homology modeling.
✍
 		32383269
(J Med Virol)
PMID
32383269
Date of Publishing: 2020 Oct
Title In silico studies on the comparative characterization of the interactions of SARSCoV2 spike glycoprotein with ACE2 receptor homologs and human TLRs
Author(s) name Choudhury A, Mukherjee S.
Journal J Med Virol
Impact factor
2.07
Citation count: 162

Molecular interaction studies and structure simulation of human SARS-related coronavirus (SARS-CoV-2 and SARS-CoV ) and ACE2 from cat/dog/pangolin/Chinese hamster N82 of pangolin ACE2 showed closer contact with RBD than M82 human ACE2, indicating that pangolin ACE2 might show better affinity to SARS-CoV-2.
✍
 		32201080
(Biochem Biophys Res Commun)
PMID
32201080
Date of Publishing: 2020 May 21
Title Spike protein recognition of mammalian ACE2 predicts the host range and an optimized ACE2 for SARS-CoV-2 infection
Author(s) nameLuan J, Lu Y et al.
Journal Biochem Biophys Res Commun
Impact factor
2.73
Citation count: 181