| CORD-19 |
COVID-19 Open Research Dataset (CORD-19) is a data mining resource, a hub of scientific papers on Covid-19 and other coronavirus researches. CORD-19 covers many relevant scientific documents on Covid-19, covering research publications and preprints. |
Literature Database |
Lucy Lu Wang,Kyle Lo,Yoganand Chandrasekhar, Russell Reas, Jiangjiang Yang, Darrin Eide, Kathryn Funk, Rodney Kinney, Ziyang Liu, William Merrill, Paul Mooney, Dewey Murdick, Devvret Rishi, Jerry Sheehan, Zhihong Shen, Brandon Stilson, Alex D. Wade, Kuansan Wang, Chris Wilhelm, Boya Xie, Douglas Raymond, Daniel S. Weld, Oren Etzioni, and Sebastian Kohlmeier |
CORD-19: The Covid-19 Open Research Dataset |
| LitCovid |
LitCovid is a covid 19 specific literature search resource developed using machine learning and deep learning algorithm to design the manual curation workflow. It is a curated literature database with articles organized into identified curated categories. LitCovid provides central access for systematic literature reviews, which are greatly needed for knowledge synthesis in evidence-based medicine with freely available data. This is helping various medical professionals, doctors, and researchers to keep up with the latest COVID-19 research in the literature. |
Literature Database |
Qingyu Chen, Alexis Allot, Zhiyong Lu |
LitCovid: an open database of COVID-19 literature |
| WHO COVID-19 database |
The global research database is a multilingual literature database that contains updated scientific information on SARS-CoV-2. |
Literature Database |
The database is built by BIREME, the Specialized Center of PAHO/AMRO and part of the Regional Officeâs Department of Evidence and Intelligence for Action in Health. |
Global research on COVID-19 is available in new WHO database |
| Rfam COVID-19 |
In response to the SARS-CoV-2 outbreak, Rfam produced a special release 14.2, Rfam COVID-19 resource that includes new and updated Coronavirus families. This release includes ten new and four revised families to annotate SARS-CoV-2 and other Coronaviridae genomes with RNA families. |
RNA families Database, Annotation |
Ioanna Kalvari, Eric P Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R Eddy, Robert D Finn, Alex Bateman, Anton I Petrov |
Rfam 14: expanded coverage of metagenomic, viral and microRNA families |
| UniProt COVID-19 |
In response to the SARS-CoV-2 outbreak, European Bioinformatics Institute - EMBL-EBI released COVID-19 UniProtKB specific for the SARS-CoV-2 coronavirus and receptor protein entries. This contains detailed information on SARS-CoV-2 protein sequences and functional information. |
Protein sequence, Functional annotation database |
EMBL-EBI |
Webinar about Sars-CoV-2 and this portal |
| DRUG REPURPOSING FOR COVID-19 |
Drug Repurposing For COVID-19 is a Web interface of the COVID19 Drug Repository. It contains different levels of information, general information about (FDA-) approved drugs, PubMed references, clinical trials, drug formulations, and molecular mechanisms of drug action. The database offers download options for all database tables and data sets in a user-friendly manner. |
Drug Repository |
Dmitry Tworowski, Alessandro Gorohovski, Sumit Mukherjee, Gon Carmi, Eliad Levy, Rajesh Detroja, Sunanda Biswas Mukherjee, and Milana Frenkel-Morgenstern |
COVID19 Drug Repository: text-mining the literature in search of putative COVID19 therapeutics |
| NAAT Amplicons |
COVID-19 In Vitro Diagnostic Devices and Test Methods contains information on the COVID-19 in vitro diagnostic medical devices and in-house laboratory-developed devices and related test methods for COVID-19. The database is a collection of scientific articles reporting about COVID-19 diagnostics. |
Diagnostics, Test method Database |
Mauro Petrillo, Maddalena Querci, Olga Tkachenko, Ioana-Raluca Siska, Enrico Ben, Alexandre Angers-Loustau, Alessia Bogni, Alessia Bogni, et al. |
The EU one-stop-shop collection of publicly available information on COVID-19 in vitro diagnostic medical devices [version 1; peer review: 2 approved] |
| GESS |
The Global Evaluation of SARS-CoV-2/hCoV-19 Sequences (GESS) is the SARS-CoV-2 SNVs resource and tools that provide multiple search functions to browse and search SNV patterns at different geographical locations. Thus, GESS provides a better understanding of the migration, transmission, and evolution pattern of SARS-CoV-2. |
SARS-CoV-2 SNVs database, SNVs/Mutation Tracker |
Shuyi Fang, Kailing Li, Jikui Shen, Sheng Liu, Juli Liu, Lei Yang, Chang-Deng Hu, Jun Wan |
GESS: a database of global evaluation of SARS-CoV-2/hCoV-19 sequences |
| ViruSurf Search |
ViruSurf is a curated sequence metadatabase containing biological, technological, and organizational dimensions. It also provides computed nucleotide and amino acid variants, called from original sequences. The web interface allows complex search queries in a simple way for extracting the resulting sequences. |
Sequence meta-database |
A. Canakoglu, P. Pinoli, A. Bernasconi, T. Alfonsi, D.P. Melidis, S. Ceri. |
ViruSurf: an integrated database to investigate viral sequences |
| CORDITE |
The Curated CORona Drug InTERactions (CORDITE) is a curated database containing drugs and interactions and potential drug information for SARS-CoV-2. CORDITE automatically incorporates data from PubMed, bioRxiv, chemRxiv, and medRxiv that report information on computational, in vitro, or case studies on potential drugs for COVID-19. The web interface allows users to access, sort, and download data to conduct meta-analyses. |
Drug-interaction database, Treatment, proteomics, design new clinical trials |
Roman Martin, Hannah F. Loš chel, Marius Welzel, Georges Hattab, Anne-Christin Hauschild, Dominik Heider |
CORDITE: The Curated CORona Drug InTERactions Database for SARS-CoV-2 |
| NCBI SARS-CoV-2 data hub |
In response to the SARS-CoV-2 outbreak, NCBI has released a SARS-CoV-2 Datahub, consisting of Sequence-related resources (SRA runs, Nucleotide records), Clinical resources, and literature resources. In addition, it allows the submission of assembled & raw read sequence data, downloads GenBank lists, and performs BLAST. |
Sequence database, Clinical resource, Literature resource |
NCBI |
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| GISAID |
Global Initiative on Sharing Avian Influenza Data (GISAID) is the most popular SARS-CoV-2 data-sharing platform. The resource includes sequence, related clinical and epidemiological data associated with SARS-CoV-2, and also several integrated tools for Sequence data analysis., |
Sequence database, Clinical resource, Epidemiology and evolution resource |
Shu, Y., McCauley, J. |
GISAID: Global initiative on sharing all influenza data - from vision to reality |
| EMBL-EBI's COVID-19 Data Portal |
In response to the SARS-CoV-2 outbreak, EMBL-EBI has developed a COVID-19 data portal, the European COVID-19 Data Platform, for data sharing and analysis of SARS-CoV-2 researches. |
Sequences, Expression, Proteins, Biochemistry, Imaging, Literature |
EMBL-EBI |
COVID-19 Data Portal demo, European Bioinformatics Institute - EMBL-EBI |